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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60782896_60784788_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60782896 - 60784788
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAG
5'SS Class:
major
3'SS Sequence:
CCTTTCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTTCCTCACCT
Flanking Amino Acid:
SLEFCNAVIQVAHPLIRNQL
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
65.9
39.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
75.4
0.57
0.7
73.7
24.6
Minor 5ss
28.6
-2.4
3.5
37.4
47.3
Minor BPS
64.8
0.54
1.9
84.08
42.8

Associated Gene:

Gene:
FAM160A1
Ensembl Gene ID:
ENSAPLG00000003814
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003904
60775872 - 60803703
27832