Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60784876_60796457_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60784876 - 60796457

Intron Length:

11582

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TATTTTCCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTGCCTTTTATT

Flanking Amino Acid:

VPVMAPALHKVTVEEVMATT

Intron Amino Acid Position:

326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

1.2

76.2

39.9

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

82.8

0.74

0.7

78.5

29.9

Minor 5ss

29.8

-2.3

3.1

41.5

44.9

Minor BPS

0.43

1.6

76.99

39.9

Associated Gene:

Gene:

FAM160A1

Ensembl Gene ID:

ENSAPLG00000003814

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003904

60775872 - 60803703

27832