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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60821999_60824570_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60821999 - 60824570
Intron Length:
2572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTTTTTAAAG
Flanking Amino Acid:
QAVIDEHEKEVMAIKAGNQK
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
79.8
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.3
0.61
1
78.1
34.2
Minor 5ss
34
-1.8
2.8
42.1
44.6
Minor BPS
65.8
0.36
1.5
67.62
40.4

Associated Gene:

Gene:
GATB
Ensembl Gene ID:
ENSAPLG00000003933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004045
60821870 - 60864528
42659