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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60830253_60830660_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60830253 - 60830660
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGCTT
5'SS Class:
major
3'SS Sequence:
CCTTTTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
TTTTCTCTAAGG
Flanking Amino Acid:
LKQHSCTVKESPISSVLLAD
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
73.4
43.3
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
79.7
0.67
0.7
75.9
26.4
Minor 5ss
32.1
-2
3.4
47.7
47.8
Minor BPS
58.8
0.14
2
71.75
41.4

Associated Gene:

Gene:
GATB
Ensembl Gene ID:
ENSAPLG00000003933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004045
60821870 - 60864528
42659