About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60830795_60837533_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60830795 - 60837533
Intron Length:
6739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
ILPEHSFTLVNEDGLTEFFE
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.7
41.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
36.5
-1.5
3.3
46.1
44.4
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
GATB
Ensembl Gene ID:
ENSAPLG00000003933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004045
60821870 - 60864528
42659