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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60837724_60839817_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
60837724 - 60839817
Intron Length:
2094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATTTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCATTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
MRDKEGMQDYRFMPEPNLPP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
73.7
37.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.4
0.68
0.8
73.8
36.7
Minor 5ss
59.8
0.33
2.3
76.2
39.4
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
GATB
Ensembl Gene ID:
ENSAPLG00000003933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004045
60821870 - 60864528
42659