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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60839863_60840263_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60839863 - 60840263
Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTGTTTTATTT
Flanking Amino Acid:
NETRAFDSKLGCTVPMRDKE
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
83.9
30.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
40.2
-1.1
3
49.9
46.4
Minor BPS
54
0.2
1.7
71.36
40.7

Associated Gene:

Gene:
GATB
Ensembl Gene ID:
ENSAPLG00000003933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004045
60821870 - 60864528
42659