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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_60846167_60849255_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60846167 - 60849255
Intron Length:
3089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
ATTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
ATTTTTTTGACA
Flanking Amino Acid:
RKHYFYADLPAGYQITQQRV
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
75.1
40.8
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
83
0.74
0.9
80.4
36.6
Minor 5ss
42.3
-0.9
2.9
61.4
42.8
Minor BPS
74.6
0.77
1
79.72
29.1

Associated Gene:

Gene:
GATB
Ensembl Gene ID:
ENSAPLG00000003933
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004045
60821870 - 60864528
42659