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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61076581_61077551_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61076581 - 61077551
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTACAAAAAT
Flanking Amino Acid:
KTGQCLQTLQGPNKHQSAVT
Intron Amino Acid Position:
615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.6
0.71
0.7
74.4
30.8
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
45.5
-0.2
2.1
67.46
42.3

Associated Gene:

Gene:
FBXW7
Ensembl Gene ID:
ENSAPLG00000004403
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037054
61075566 - 61242889
167324
ENSAPLT00000004544
61076312 - 61235865
159554
ENSAPLT00000047983
61076312 - 61107596
31285