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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61105139_61106954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61105139 - 61106954
Intron Length:
1816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTCACCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTCCCTCACCT
Flanking Amino Acid:
YGTLKMIFYKMKRKLDHGSE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
76.3
0.59
0.8
69
31.1
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
64.2
0.52
1.9
86.08
39.7

Associated Gene:

Gene:
FBXW7
Ensembl Gene ID:
ENSAPLG00000004403
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047983
61076312 - 61107596
31285