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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61168783_61235803_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61168783 - 61235803
Intron Length:
67021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAGCTTGTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79
0.65
0.7
78
30.8
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
48.2
-0
1.9
65.44
40

Associated Gene:

Gene:
FBXW7
Ensembl Gene ID:
ENSAPLG00000004403
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004544
61076312 - 61235865
159554