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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61254315_61256920_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61254315 - 61256920
Intron Length:
2606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
CATGTACACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TTCTCTTCCATG
Flanking Amino Acid:
EEEKESMANPSDGES*
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
65
0.37
1.3
76.1
38
Major PPT
61.6
0.26
1
51.7
41.8
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
48.2
-0.2
2
58.73
44

Associated Gene:

Gene:
TMEM154
Ensembl Gene ID:
ENSAPLG00000000862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000862
61254299 - 61267211
12913