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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61258558_61259033_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61258558 - 61259033
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTCCC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTGATTTAAGC
Flanking Amino Acid:
HHEIWPCHEQSPIFEEDTPS
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.4
63.7
38.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.8
0.67
1
79.3
33.1
Minor 5ss
29.5
-2.3
2.9
36.8
40.3
Minor BPS
49.8
-0
1.9
62.36
43.6

Associated Gene:

Gene:
TMEM154
Ensembl Gene ID:
ENSAPLG00000000862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000862
61254299 - 61267211
12913