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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61259371_61260343_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61259371 - 61260343
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
TAACTGTGAACA
Flanking Amino Acid:
VVHKRKKSKQDELGSENVKR
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
46.7
-0.2
2.1
59.8
39.4

Associated Gene:

Gene:
TMEM154
Ensembl Gene ID:
ENSAPLG00000000862
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000862
61254299 - 61267211
12913