About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61288665_61292560_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61288665 - 61292560
Intron Length:
3896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTGGG
5'SS Class:
major
3'SS Sequence:
TCTTGTACAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
GTTTCTTGTACA
Flanking Amino Acid:
AGEEVQSDSKGGAMAQESPK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
65.1
41
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
67.7
0.4
0.9
63.5
37
Minor 5ss
26.7
-2.7
3
32
42.4
Minor BPS
58.9
0.27
1.8
72.93
38.4

Associated Gene:

Gene:
ARFIP1
Ensembl Gene ID:
ENSAPLG00000000892
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032899
61288557 - 61325204
36648
ENSAPLT00000000913
61288557 - 61325204
36648