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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61292663_61302762_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
61292663 - 61302762
Intron Length:
10100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CAAATATTTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTATTCAAAT
Flanking Amino Acid:
EDSHEHSFNRDLKRSLPVGL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
84.6
33.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
59.4
0.21
1.2
61
43.5
Minor 5ss
39
-1.2
3.1
50.4
45.6
Minor BPS
60
0.39
1.8
82.81
37.9

Associated Gene:

Gene:
ARFIP1
Ensembl Gene ID:
ENSAPLG00000000892
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032899
61288557 - 61325204
36648
ENSAPLT00000000913
61288557 - 61325204
36648