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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61302878_61305621_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61302878 - 61305621
Intron Length:
2744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
GTCCACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATGTTAAAT
Flanking Amino Acid:
VVEAGPFPGKGSSASPKPSV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
76.9
0.61
0.9
72.8
37.1
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
50
0.08
2.2
73.28
43.5

Associated Gene:

Gene:
ARFIP1
Ensembl Gene ID:
ENSAPLG00000000892
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000913
61288557 - 61325204
36648