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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61305718_61307190_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61305718 - 61307190
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATAG
5'SS Class:
major
3'SS Sequence:
ATTTCTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTTGCTTTATTT
Flanking Amino Acid:
GQGCDLIIPTGGRAQQKSGP
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
61.3
40.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.1
0.48
1
65.6
39.6
Minor 5ss
48.9
-0.1
2.6
64.3
47.2
Minor BPS
58.7
0.35
1.7
74.81
43.2

Associated Gene:

Gene:
ARFIP1
Ensembl Gene ID:
ENSAPLG00000000892
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000913
61288557 - 61325204
36648