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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6131854_6134237_R

Intron Information:

Intron Rank:
134983
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6131854 - 6134237
Intron Length:
2384

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
CAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTCTAC|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
45.6
-0.2
3.2
70.3
40.1
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
59.9
0.29
1.6
65.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019983
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036024
6131664 - 6140151
8488
ENSAPLT00000034276
6131664 - 6140151
8488