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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61334298_61340916_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61334298 - 61340916
Intron Length:
6619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
AGTAGATTAATC
Flanking Amino Acid:
KSSFKETKEEVSILDAKRSM
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
85.6
0.8
0.7
84.3
23.5
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
47.7
-0.1
2
59.73
39.1

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448