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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61341659_61350346_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61341659 - 61350346
Intron Length:
8688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTTGCTAGTG
Flanking Amino Acid:
FLKLLPEAEEVKKLKAFDGD
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
86.8
0.83
0.6
80.7
31.3
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
41
-0.8
2.4
50.93
44.1

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448