Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6134443_6139994_R

Intron Information:

Intron Rank:

134987

Intron Class:

major

Intron Phase:

Intron Coordinates:

6134443 - 6139994

Intron Length:

5552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

CACATTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCACAT

U12 Branch Point Sequence:

CTTTCTTCCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

74.9

36.2

Major BPS

65.1

0.38

1.1

71.2

35.2

Major PPT

68.1

0.41

0.9

60.9

34.8

Minor 5ss

48.6

-0.1

2.8

64.8

41.1

Minor BPS

54.9

0.15

71.01

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019983

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036024

6131664 - 6140151

8488