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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61350433_61350513_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61350433 - 61350513
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAGA
5'SS Class:
major
3'SS Sequence:
TTGTCTGCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CAGTTCTAAACC
Flanking Amino Acid:
SFMYLLIQVPNYALRIEAMV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.1
0.63
0.9
69.8
41.5
Minor 5ss
33.3
-1.9
3.2
39.9
40.2
Minor BPS
56.9
0.2
1.7
62.49
43.3

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448