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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61353492_61354379_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61353492 - 61354379
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATAAA
5'SS Class:
major
3'SS Sequence:
CTGTTTGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGTT
U12 Branch Point Sequence:
TTCTGTTTGCTT
Flanking Amino Acid:
GMSLLHFVALEAQKKDAALL
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
71
34
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
79.4
0.66
0.9
77
37.3
Minor 5ss
40.6
-1
2.7
47.2
43.7
Minor BPS
40
-0.7
3.6
69.71
42.6

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448