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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61354451_61356777_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61354451 - 61356777
Intron Length:
2327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCTGTATAT
Flanking Amino Acid:
EKIRDVHDAARLSIDNLEAE
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
74.1
38.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78.7
0.65
0.8
76.9
37.2
Minor 5ss
37.2
-1.4
3
47
48.3
Minor BPS
47.6
-0.1
2.3
72.46
44.8

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448