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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61356896_61359110_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61356896 - 61359110
Intron Length:
2215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCACCCTACTG
Flanking Amino Acid:
LFYQMESFLQFAVRHLKELE
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1.2
66.5
44.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.8
84.3
30.8
Minor 5ss
37.6
-1.4
2.4
43.2
43.7
Minor BPS
47.1
-0.3
2
56.49
45.2

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448