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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61359276_61362047_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61359276 - 61362047
Intron Length:
2772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
CTTTCTTTATCA
Flanking Amino Acid:
FCIRFNKAVKENREREIQEL
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.8
35.5
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
85
0.79
0.8
85.3
27.7
Minor 5ss
40.6
-1
2.8
52.8
44.1
Minor BPS
70.7
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
FHDC1
Ensembl Gene ID:
ENSAPLG00000001912
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001919
61333646 - 61364093
30448