Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6140377_6168575_F

Intron Information:

Intron Rank:

140212

Intron Class:

major

Intron Phase:

Intron Coordinates:

6140377 - 6168575

Intron Length:

28199

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGCCT

5'SS Class:

major

3'SS Sequence:

TCCTCTGTTTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TGGTTTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

60.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

70.5

0.46

1.1

74.4

34.2

Minor 5ss

31.7

-2.1

3.6

48.5

47.2

Minor BPS

57.8

0.32

1.6

71.48

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025406

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041710

6140159 - 6170935

30777