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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6141704_6168575_F

Intron Information:

Intron Rank:
140214
Intron Class:
major
Intron Phase:
Intron Coordinates:
6141704 - 6168575
Intron Length:
26872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTGA
5'SS Class:
major
3'SS Sequence:
TCCTCTGTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
63.7
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
1.1
74.4
34.2
Minor 5ss
43.9
-0.7
2.8
55.7
48.5
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025406
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042953
6141580 - 6170935
29356