Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61452268_61459521_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

61452268 - 61459521

Intron Length:

7254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTATTTTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTTATTTTAAAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

74.7

0.56

1.1

74.8

38.9

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

63.9

0.3

1.5

68.85

38.6

Associated Gene:

Gene:

TRIM2

Ensembl Gene ID:

ENSAPLG00000001980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032556

61451614 - 61514889

63276