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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61478183_61480268_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61478183 - 61480268
Intron Length:
2086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
TCCCCCTCCACC
Flanking Amino Acid:
VLPCLHTFCERCLQNYIPAH
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
74.4
0.55
0.7
68
25.7
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
48.6
-0.1
2
59.94
45.2

Associated Gene:

Gene:
TRIM2
Ensembl Gene ID:
ENSAPLG00000001980
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002018
61470894 - 61513966
43073
ENSAPLT00000032556
61451614 - 61514889
63276
ENSAPLT00000028302
61407489 - 61513966
106478