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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61486980_61487665_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61486980 - 61487665
Intron Length:
686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACAGAGT
5'SS Class:
major
3'SS Sequence:
ATCCCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTAATTTAATC
Flanking Amino Acid:
LQVQLDAVNKRLPEIDSALH
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.1
58.2
46.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73
0.52
0.8
69.8
30.3
Minor 5ss
32.8
-2
3.5
48.1
47.8
Minor BPS
61
0.32
1.5
68.9
36.4

Associated Gene:

Gene:
TRIM2
Ensembl Gene ID:
ENSAPLG00000001980
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032556
61451614 - 61514889
63276
ENSAPLT00000028302
61407489 - 61513966
106478
ENSAPLT00000002018
61470894 - 61513966
43073