About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61491203_61499620_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61491203 - 61499620
Intron Length:
8418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTGTTCAATT
Flanking Amino Acid:
PIEDDLIFRVGTKGRNKGEF
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.8
34.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.7
0.56
0.9
71.7
38.3
Minor 5ss
31.6
-2.1
3.4
42.4
45.1
Minor BPS
54.6
0.22
2
75.51
42.1

Associated Gene:

Gene:
TRIM2
Ensembl Gene ID:
ENSAPLG00000001980
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032556
61451614 - 61514889
63276
ENSAPLT00000028302
61407489 - 61513966
106478
ENSAPLT00000002018
61470894 - 61513966
43073