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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61501145_61508325_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61501145 - 61508325
Intron Length:
7181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGTTAAT
U12 Branch Point Sequence:
GTTAATGTATTT
Flanking Amino Acid:
SIFSSDGKFKAKIGSGKLMG
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
72
0.55
1.2
73.3
39.1
Major PPT
87.2
0.84
0.6
85.9
21.1
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
41.7
-0.5
2.2
62.03
42.3

Associated Gene:

Gene:
TRIM2
Ensembl Gene ID:
ENSAPLG00000001980
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032556
61451614 - 61514889
63276
ENSAPLT00000028302
61407489 - 61513966
106478
ENSAPLT00000002018
61470894 - 61513966
43073