Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61508495_61510246_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61508495 - 61510246

Intron Length:

1752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACACTTG

5'SS Class:

major

3'SS Sequence:

TTCTGTATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAG

U12 Branch Point Sequence:

TTATTTTTAGTT

Flanking Amino Acid:

SRGNGDKQFAGPHFAAVNSN

Intron Amino Acid Position:

624

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

63.2

43.9

Major BPS

72.5

0.56

1.5

71.7

44.6

Major PPT

82.9

0.74

0.9

77.4

35.6

Minor 5ss

45.7

-0.4

3.2

64.2

47.3

Minor BPS

65.1

0.55

1.5

79.98

36.5

Associated Gene:

Gene:

TRIM2

Ensembl Gene ID:

ENSAPLG00000001980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032556

61451614 - 61514889

63276

ENSAPLT00000028302

61407489 - 61513966

106478

ENSAPLT00000002018

61470894 - 61513966

43073