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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61512778_61513813_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
61512778 - 61513813
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGATT
5'SS Class:
major
3'SS Sequence:
TATCACCCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTCATAACT
Flanking Amino Acid:
VADWGNSRIQVFDGSGSFLS
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
75.8
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
58.4
0.19
1
56.7
33.2
Minor 5ss
36.2
-1.6
3.7
56.4
48
Minor BPS
73.6
0.82
1.5
89.76
33.8

Associated Gene:

Gene:
TRIM2
Ensembl Gene ID:
ENSAPLG00000001980
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032556
61451614 - 61514889
63276
ENSAPLT00000028302
61407489 - 61513966
106478
ENSAPLT00000002018
61470894 - 61513966
43073