About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61522174_61523023_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61522174 - 61523023
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
TCTCCTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAGAAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
MSKKKGLSVEE
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
59.8
45.2
Major BPS
45
-0.3
1.5
50
42.2
Major PPT
78.4
0.64
0.8
76.7
32
Minor 5ss
35.9
-1.6
3.3
43.6
46
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
MND1
Ensembl Gene ID:
ENSAPLG00000002450
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002471
61522171 - 61560649
38479