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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61522574_61523023_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61522574 - 61523023
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGTACC
5'SS Class:
major
3'SS Sequence:
TCTCCTGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAAGAAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
70.9
39.4
Major BPS
45
-0.3
1.5
50
42.2
Major PPT
78.4
0.64
0.8
76.7
32
Minor 5ss
32.9
-1.9
2.4
32.1
34
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
MND1
Ensembl Gene ID:
ENSAPLG00000002450
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021237
61522481 - 61560649
38169