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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61523090_61523986_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61523090 - 61523986
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
GTGTTTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TGCAGCTGAAGT
Flanking Amino Acid:
ARMMEIFFETKDVFQLKDIE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
72.8
0.51
1
68.1
42.3
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
44.8
-0.3
2.2
62.21
47.1

Associated Gene:

Gene:
MND1
Ensembl Gene ID:
ENSAPLG00000002450
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039389
61522621 - 61560649
38029
ENSAPLT00000021237
61522481 - 61560649
38169
ENSAPLT00000018972
61522621 - 61559660
37040
ENSAPLT00000002471
61522171 - 61560649
38479