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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61525185_61541240_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61525185 - 61541240
Intron Length:
16056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCA
Flanking Amino Acid:
KRKLEELQSQLAESSQKKEA
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
66
45.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
89.3
25.7
Minor 5ss
33
-1.9
2.9
41.4
45
Minor BPS
64.4
0.45
1.5
76.08
35.2

Associated Gene:

Gene:
MND1
Ensembl Gene ID:
ENSAPLG00000002450
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039389
61522621 - 61560649
38029
ENSAPLT00000021237
61522481 - 61560649
38169
ENSAPLT00000018972
61522621 - 61559660
37040
ENSAPLT00000002471
61522171 - 61560649
38479