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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61575012_61581787_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61575012 - 61581787
Intron Length:
6776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
AGATGCTTACGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
72.1
0.5
1
73.1
37.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
45.8
-0.2
2.2
63.75
46.2

Associated Gene:

Gene:
TMEM131L
Ensembl Gene ID:
ENSAPLG00000002621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002692
61574941 - 61652026
77086