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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61575028_61576174_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
61575028 - 61576174
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCACTTAT
5'SS Class:
weak_major
3'SS Sequence:
GTGTCGCCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAA
U12 Branch Point Sequence:
GGCCCTGGAACT
Flanking Amino Acid:
LLPAQVRGSGAHGLAEPLQQ
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.5
65.8
42.7
Major BPS
59.5
0.24
1.3
51.3
44.2
Major PPT
67.1
0.39
0.9
63.1
39.6
Minor 5ss
42.4
-0.8
2.7
50.3
46
Minor BPS
44.6
-0.3
2.1
59.79
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021661
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019883
61572719 - 61576215
3497