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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61581832_61607306_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
61581832 - 61607306
Intron Length:
25475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.8
0.89
0.7
88.1
29.1
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
TMEM131L
Ensembl Gene ID:
ENSAPLG00000002621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002692
61574941 - 61652026
77086