Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_6158467_6159001_F

Intron Information:

Intron Rank:

135240

Intron Class:

major

Intron Phase:

Intron Coordinates:

6158467 - 6159001

Intron Length:

535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTAAG

5'SS Class:

strong_major

3'SS Sequence:

ACTTCCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAC

U12 Branch Point Sequence:

TGTGTTTAAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

0.9

38.4

Major BPS

72.4

0.56

79.3

29.5

Major PPT

84.1

0.77

0.8

81.1

30.1

Minor 5ss

28.2

-2.5

2.8

42.7

Minor BPS

57.1

0.3

1.8

75.46

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022753

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046997

6118042 - 6159028

40987