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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61623823_61624450_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61623823 - 61624450
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTATAG
Flanking Amino Acid:
KACLSCPVMEGYFDVNPSAA
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
72.9
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.6
85
22.8
Minor 5ss
45.2
-0.5
2.5
48.8
47.3
Minor BPS
69.3
0.47
1.8
76.89
40.3

Associated Gene:

Gene:
TMEM131L
Ensembl Gene ID:
ENSAPLG00000002621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019802
61607320 - 61654021
46702
ENSAPLT00000002692
61574941 - 61652026
77086