About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61634855_61635255_F


Intron Information:

Intron Rank:
21

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
61634855 - 61635255

Intron Length:
401

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGT|GTAAGCACT

5'SS Class:
major

3'SS Sequence:
GCTTTCCTGGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AAATAAC

U12 Branch Point Sequence:
GGAAAAATAACA

Flanking Amino Acid:
AQNSSREISIVFTPDFTSSW

Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.7
0.46
1.2
68.3
42.6

Major BPS
61.3
0.28
1
62
30.6

Major PPT
73.5
0.53
1
69.4
36.8

Minor 5ss
44
-0.7
2.9
60.1
44

Minor BPS
42.2
-0.6
1.9
50.92
38.7

Associated Gene:

Gene:
TMEM131L

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

61574941 - 61652026
77086

61607320 - 61654021
46702