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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61645241_61646297_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61645241 - 61646297
Intron Length:
1057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCATTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
LNLSHNICNTSRDMNSIPQY
Intron Amino Acid Position:
1294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.8
82
28.8
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
TMEM131L
Ensembl Gene ID:
ENSAPLG00000002621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019802
61607320 - 61654021
46702
ENSAPLT00000002692
61574941 - 61652026
77086