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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61650267_61651747_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61650267 - 61651747
Intron Length:
1481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCCATGATG
Flanking Amino Acid:
WEPASYVNSTPYLSSTRSLS
Intron Amino Acid Position:
1441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.9
0.74
0.8
76.4
32.3
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
59.7
0.16
1.7
69.36
37.9

Associated Gene:

Gene:
TMEM131L
Ensembl Gene ID:
ENSAPLG00000002621
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019802
61607320 - 61654021
46702
ENSAPLT00000002692
61574941 - 61652026
77086