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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61664011_61665236_F

Intron Information:

Intron Rank:
150313
Intron Class:
major
Intron Phase:
Intron Coordinates:
61664011 - 61665236
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGAGAT
5'SS Class:
major
3'SS Sequence:
TATTATTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
66
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
83.3
0.75
0.8
81.7
35.3
Minor 5ss
33
-1.9
3.5
42.8
44.5
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030783
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032310
61663915 - 61668599
4685