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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_61666537_61667086_R

Intron Information:

Intron Rank:
146446
Intron Class:
major
Intron Phase:
Intron Coordinates:
61666537 - 61667086
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.9
0.79
0.8
77
37.3
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
50.8
0.1
1.9
72.46
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026138
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034571
61659755 - 61667172
7418